Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs78625306 chr16:79270136 A/G 3.88E-13 486 31.53 31.67 19.35 KM Plot
THCA rs78631050 chr3:53941096 A/G 2.6E-6 501 31.67 31.58 24.75 KM Plot
THCA rs7872998 chr9:112131222 T/C 9.56E-7 494 31.93 30.07 31.87 KM Plot
THCA rs78798271 chr1:152978307 G/T 0.000139 500 31.53 32.9 37.7 KM Plot
THCA rs78893207 chr10:104796138 T/C 6.92E-14 503 31.27 35.33 32.1 KM Plot
THCA rs78938123 chr13:108849329 A/G 1.38E-5 496 31.47 32.9 31.73 KM Plot
THCA rs7903472 chr10:105021474 C/T 0.000112 501 31.03 35.08 32.1 KM Plot
THCA rs79088798 chr16:79270647 T/C 0 486 31.62 32.27 5.8 KM Plot
THCA rs79161131 chr16:79272223 G/T 5.77E-12 501 31.5 31 19.35 KM Plot
THCA rs7918582 chr10:104688892 C/T 3.04E-9 502 31.03 34.18 29.58 KM Plot
THCA rs79254677 chr10:104691567 A/G 9.54E-14 498 31.27 35.6 32.1 KM Plot
THCA rs79331374 chr10:104882913 G/A 7.56E-14 502 31.15 35.33 32.1 KM Plot
THCA rs79402685 chr1:152920629 A/T 0.000139 500 31.43 34.43 37.7 KM Plot
THCA rs79403905 chr7:44330743 T/C 2.23E-5 490 31.9 27.43 18.65 KM Plot
THCA rs7941404 chr11:47712213 C/T 1.65E-10 493 31.47 30.32 27.63 KM Plot